Recent Publications:
MirGeneDB2.0: the curated microRNA gene database (in preparation)
Fromm. B., Domanska, D., Hackenberg, M., Mathelier, A., Hoye, E., Johansen, M., Hovig, E., Flatmark, K., and Peterson, K. J.
FX-MIR: a microRNA cluster in the fragile X region that targets FMR1 (submitted)
Ramaiah, M., Tan. K., Plank, T.-D. M., Song, H.-W., Dumdie, J. N., Jones, S., Shum, E. Y., Sheridan, S. D., Peterson, K. J., Gromoll, J., Haggerty, S. J., and Wilkinson, M. F. EMBO.
Unicellular origin of the animal microRNA machinery (in press)
Brate, J., Neumann, R. S., Fromm, B., Haraldsen, A. B., Tarver, J. E., Suga, H., Donoghue, P. C. J., Peterson, K. J., Ruiz-Trillo I., Grini, P. E., Shalchian-Talbrizi, K. Current Biology.
Large scale changes in the non-coding transcriptome during regeneration in Eisenia fetida (in press)
Bhambri, A., Dhaunta, N., Patel, S. S., Hardikar, M., Bhatt, A., Srikakulam, Nagesh, Shridar, S., Vellarikkal, S., Pandey, R., Jayaranjan, R., Verman, A., Kuman, V., Gautam, P., Khan, J. A., Fromm, B., Peterson, K. J., Scaria, V., Sivasubba, S., and Pillai, B. PLoS ONE.
Evolution of metazoan morphological disparity
Deline, B., Greenwood, J.M., Clark, J.W., Puttick, M.N., Peterson, K.J., Donoghue, P.C.J. Proc Natl Acad Sci U S A. (2018) Sep 4. pii: 201810575. doi: 10.1073/pnas.1810575115. [Epub ahead of print] PMID:30181261
Well-Annotated microRNAomes Do Not Evidence Pervasive miRNA Loss
Tarver, J.E., Taylor, R.S., Puttick, M.N., Lloyd, G.T., Pett, W., Fromm, B., Schirrmeister, B.E., Pisani, D., Peterson, K.J., Donoghue, P.C.J. Genome Biol Evol. (2018) Jun 1;10(6):1457-1470. doi: 10.1093/gbe/evy096. PMID:29788279
Big Strides in Cellular MicroRNA Expression
Halushka, M.K., Fromm, B., Peterson, K.J., McCall, M.N. Trends Genet. (2018) Mar;34(3):165-167. doi: 10.1016/j.tig.2017.12.015. Epub 2018 Jan 18. PMID:29361313
Peterson, K.J. and Eernisse, D.J.. Org. Divers. Evol. (2016)16:401-418. doi 10.1007/s13127-16-0279-x
The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay
Shum, E.Y., Jones, S.H., Shao, A., Dumdie, J., Krause, M.D., Chan, W.K., Lou, C.H., Espinoza, J.L., Song, H.W., Phan, M.H., Ramaiah, M., Huang, L., McCarrey, J.R., Peterson, K.J., De Rooij, D.G., Cook-Andersen, H., Wilkinson, M.F. Cell. (2016) Apr 7;165(2):382-95. doi:10.1016/j.cell.2016.02.046. Epub 2016 Mar 31. PMID:27040500
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference.
Tarver, J.E., Dos Reis, M., Mirarab, S., Moran, R.J., Parker, S., O’Reilly, J.E., King, B.L., O’Connell, M.J., Asher, R.J., Warnow, T., Peterson, K.J., Donoghue, P.C., Pisani, D. Genome Biol. Evol. (2016) Jan 5;8(2):330-44. doi: 10.1093/gbe/evv261. PMID:26733575
Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ. Annu Rev Genet. 2015;49:213-42. doi: 10.1146/annurev-genet-120213-092023. Epub 2015 Oct 14. Review. PMID:2647338
miRNAs: small genes with big potential in metazoan phylogenetics.
Tarver JE, Sperling EA, Nailor A, Heimberg AM, Robinson JM, King BL, Pisani D, Donoghue PC, Peterson KJ. Mol Biol Evol. 2013 Nov;30(11):2369-82. doi: 10.1093/molbev/mst133. Epub 2013 Aug 2. Review. PMID:23913097
MicroRNAs support the monophyly of enteropneust hemichordates.
Peterson KJ, Su YH, Arnone MI, Swalla B, King BL. J Exp Zool B Mol Dev Evol. 2013 Sep;320(6):368-74. doi: 10.1002/jez.b.22510. Epub 2013 May 23. PMID:23703796
Robinson JM, Sperling EA, Bergum B, Adamski M, Nichols SA, Adamska M, Peterson KJ. J Exp Zool B Mol Dev Evol. 2013 Mar;320(2):84-93. doi: 10.1002/jez.b.22485. Epub 2013 Jan 24. PMID:23349041