Data Reuse and Analysis Applications

CF researchers can utilize this set of applications, developed by the BBC, to investigate public data and apply novel analyses to both publicly available and user-supplied transcriptomic datasets. Each application offers a point and click interface that delivers analysis results without requiring computational expertise from the user.

Application Name Link Description
ESKAPE Act PLUS http://scangeo.dartmouth.edu/ESKAPE/ Streamlined web app for pathway activation analysis of user-provided gene expression data, focusing on ESKAPE pathogens and widely studied prokaryotes.
HSAPATH http://scangeo.dartmouth.edu/HSAPath/ Streamlined web app for pathway activation analysis of user-provided gene expression data, focusing on human cell data.
CF-Seq http://scangeo.dartmouth.edu/CFSeq/ Dynamic dashboard for exploring experimental conditions and gene expression across 120+ CF pathogen studies.
Rocket-MiR http://scangeo.dartmouth.edu/RocketmiR/ Translational launchpad for a new class of miRNA-based antimicrobial therapies that makes cross-species miRNA-mRNA interaction predictions.
E.PathDash http://scangeo.dartmouth.edu/EPathDash/ Dynamic dashboard for rapid reanalysis for Pseudomonas, Staphylococcus, Streptococcus, and Bacteroides RNA-seq datasets that focuses on pathway activation analysis.
ScanGeo http://scangeo.dartmouth.edu/ScanGEO/ Search engine for differentially expressed genes across a collection of NCBI gene expression omnibus (GEO) datasets.
RESPIRE http://respire.dartmouth.edu The RepoSitory for Pulmonary expressIon data ReusE is a unified search interface for publicly available data, where users can download standardized gene expression or microbiome datasets identified based on their search criteria.